Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/HicB(antitoxin) |
| Location | 1932594..1933270 | Replicon | chromosome |
| Accession | NZ_CP083938 | ||
| Organism | Comamonas thiooxydans strain CSUSB4 | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | - |
| Locus tag | LCH15_RS08895 | Protein ID | WP_224651097.1 |
| Coordinates | 1933088..1933270 (-) | Length | 61 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | A0A5D9ANX7 |
| Locus tag | LCH15_RS08890 | Protein ID | WP_034358869.1 |
| Coordinates | 1932594..1933022 (-) | Length | 143 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCH15_RS08845 (LCH15_08845) | 1928367..1928930 | + | 564 | WP_224650465.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| LCH15_RS08850 (LCH15_08850) | 1929337..1929609 | + | 273 | WP_003056615.1 | HU family DNA-binding protein | - |
| LCH15_RS08860 (LCH15_08860) | 1929859..1930185 | + | 327 | WP_224650466.1 | hypothetical protein | - |
| LCH15_RS08865 (LCH15_08865) | 1930195..1930983 | + | 789 | WP_224650467.1 | site-specific integrase | - |
| LCH15_RS08870 (LCH15_08870) | 1930931..1931182 | - | 252 | WP_224650468.1 | helix-turn-helix domain-containing protein | - |
| LCH15_RS08875 (LCH15_08875) | 1931320..1931670 | + | 351 | WP_224650469.1 | hypothetical protein | - |
| LCH15_RS08880 (LCH15_08880) | 1931703..1931950 | + | 248 | Protein_1698 | hypothetical protein | - |
| LCH15_RS08885 (LCH15_08885) | 1932044..1932346 | - | 303 | WP_224650470.1 | hypothetical protein | - |
| LCH15_RS08890 (LCH15_08890) | 1932594..1933022 | - | 429 | WP_034358869.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| LCH15_RS08895 (LCH15_08895) | 1933088..1933270 | - | 183 | WP_224651097.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| LCH15_RS08900 (LCH15_08900) | 1933371..1933625 | - | 255 | WP_224650471.1 | hypothetical protein | - |
| LCH15_RS08905 (LCH15_08905) | 1933802..1934677 | + | 876 | WP_224648500.1 | site-specific integrase | - |
| LCH15_RS08910 (LCH15_08910) | 1934687..1935883 | + | 1197 | WP_224650472.1 | IS91 family transposase | - |
| LCH15_RS08915 (LCH15_08915) | 1936567..1937406 | + | 840 | WP_224650473.1 | AlpA family phage regulatory protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 61 a.a. Molecular weight: 7021.07 Da Isoelectric Point: 10.9594
>T217829 WP_224651097.1 NZ_CP083938:c1933270-1933088 [Comamonas thiooxydans]
VVVKISEFKRWLEAQEVRVENGTNHWRLYHNGNVSTLPRHPSKELKEGTRRAILKQLGIT
VVVKISEFKRWLEAQEVRVENGTNHWRLYHNGNVSTLPRHPSKELKEGTRRAILKQLGIT
Download Length: 183 bp
>T217829 NZ_CP114891:122603-122917 [Escherichia coli]
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTGGG
GAACACGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCATCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTTGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTCTTTACCGCTGTTCATCGTACTAAGGGGAAAAAATGA
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTGGG
GAACACGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCATCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTTGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTCTTTACCGCTGTTCATCGTACTAAGGGGAAAAAATGA
Antitoxin
Download Length: 143 a.a. Molecular weight: 15324.49 Da Isoelectric Point: 4.8070
>AT217829 WP_034358869.1 NZ_CP083938:c1933022-1932594 [Comamonas thiooxydans]
MQKYPARFDPADEGGYTVSFRDIPEALTQGDDLADAESMARDALVTAMDFYFEDGRAVPAPSKPEKGERLVELPASVAVK
VALLNARLATGARPADVARAMGVKPQEMTRVFDLGHATKIDTVAAALAAMGYELELNVRRVK
MQKYPARFDPADEGGYTVSFRDIPEALTQGDDLADAESMARDALVTAMDFYFEDGRAVPAPSKPEKGERLVELPASVAVK
VALLNARLATGARPADVARAMGVKPQEMTRVFDLGHATKIDTVAAALAAMGYELELNVRRVK
Download Length: 429 bp
>AT217829 NZ_CP114891:122914-123330 [Escherichia coli]
ATGATTGCGATTGCCGACATCTTGCAAGCAGGAGAAAAGCTAACTGCTGTGGCACCTTTTCTGGCGGGTATTCAGAACGA
GGAACAATACACCCAGGCGCTGGAACTGGTAGATCATCTGCTGCTCAACGATCCTGAAAACCCCTTGCTGGATCTGGTGT
GTGCCAAAATAACCGCGTGGGAAGAATCAGCGCCCGAATTTGCGGAATTTAATGCCATGGCTCAAGCCATGCCTGGCGGT
ATAGCCGTGATTCGTACCCTTATGGATCAATATGGTTTAACCCTTTCCGATCTGCCGGAAATTGGCAGTAAATCTATGGT
GTCACGCGTTTTGAGCGGGAAGAGGAAATTAACGCTGGAACACGCTAAAAAATTGGCAACGCGATTCGGCATTTCTCCCG
CCTTGTTTATTGATTAA
ATGATTGCGATTGCCGACATCTTGCAAGCAGGAGAAAAGCTAACTGCTGTGGCACCTTTTCTGGCGGGTATTCAGAACGA
GGAACAATACACCCAGGCGCTGGAACTGGTAGATCATCTGCTGCTCAACGATCCTGAAAACCCCTTGCTGGATCTGGTGT
GTGCCAAAATAACCGCGTGGGAAGAATCAGCGCCCGAATTTGCGGAATTTAATGCCATGGCTCAAGCCATGCCTGGCGGT
ATAGCCGTGATTCGTACCCTTATGGATCAATATGGTTTAACCCTTTCCGATCTGCCGGAAATTGGCAGTAAATCTATGGT
GTCACGCGTTTTGAGCGGGAAGAGGAAATTAACGCTGGAACACGCTAAAAAATTGGCAACGCGATTCGGCATTTCTCCCG
CCTTGTTTATTGATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|