Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relE-parD/RelE-RHH |
| Location | 2871938..2872506 | Replicon | chromosome |
| Accession | NZ_CP083911 | ||
| Organism | Tepidimonas taiwanensis strain LMG 22826 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | LCC91_RS13615 | Protein ID | WP_143898582.1 |
| Coordinates | 2871938..2872219 (-) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | - |
| Locus tag | LCC91_RS13620 | Protein ID | WP_143898580.1 |
| Coordinates | 2872216..2872506 (-) | Length | 97 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCC91_RS13565 (LCC91_13565) | 2867013..2867327 | + | 315 | WP_143898588.1 | 50S ribosomal protein L23 | - |
| LCC91_RS13570 (LCC91_13570) | 2867332..2868156 | + | 825 | WP_043700956.1 | 50S ribosomal protein L2 | - |
| LCC91_RS13575 (LCC91_13575) | 2868168..2868443 | + | 276 | WP_043700960.1 | 30S ribosomal protein S19 | - |
| LCC91_RS13580 (LCC91_13580) | 2868455..2868784 | + | 330 | WP_043700961.1 | 50S ribosomal protein L22 | - |
| LCC91_RS13585 (LCC91_13585) | 2868801..2869658 | + | 858 | WP_058615890.1 | 30S ribosomal protein S3 | - |
| LCC91_RS13590 (LCC91_13590) | 2869661..2870077 | + | 417 | WP_043700966.1 | 50S ribosomal protein L16 | - |
| LCC91_RS13595 (LCC91_13595) | 2870092..2870289 | + | 198 | WP_058615891.1 | 50S ribosomal protein L29 | - |
| LCC91_RS13600 (LCC91_13600) | 2870302..2870565 | + | 264 | WP_043700971.1 | 30S ribosomal protein S17 | - |
| LCC91_RS13605 (LCC91_13605) | 2870663..2871187 | + | 525 | WP_143898586.1 | peroxiredoxin | - |
| LCC91_RS13610 (LCC91_13610) | 2871381..2871893 | - | 513 | WP_143898584.1 | GNAT family N-acetyltransferase | - |
| LCC91_RS13615 (LCC91_13615) | 2871938..2872219 | - | 282 | WP_143898582.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LCC91_RS13620 (LCC91_13620) | 2872216..2872506 | - | 291 | WP_143898580.1 | hypothetical protein | Antitoxin |
| LCC91_RS13625 (LCC91_13625) | 2872599..2873336 | - | 738 | WP_224440960.1 | cytochrome b/b6 domain-containing protein | - |
| LCC91_RS13630 (LCC91_13630) | 2873509..2873952 | + | 444 | WP_143898214.1 | cytochrome c | - |
| LCC91_RS13635 (LCC91_13635) | 2874072..2874581 | - | 510 | WP_143898216.1 | TlpA disulfide reductase family protein | - |
| LCC91_RS13640 (LCC91_13640) | 2874817..2875215 | + | 399 | WP_143898217.1 | response regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10476.96 Da Isoelectric Point: 6.4804
>T217792 WP_143898582.1 NZ_CP083911:c2872219-2871938 [Tepidimonas taiwanensis]
MRILFWTPEAIQDRVDIYDHIEADNPAAALALDERLSGAAGRLIEHPGLGRPGRVAGTRELVVHPNYLLVYDITDDQVRV
LRVLHAARQWPSK
MRILFWTPEAIQDRVDIYDHIEADNPAAALALDERLSGAAGRLIEHPGLGRPGRVAGTRELVVHPNYLLVYDITDDQVRV
LRVLHAARQWPSK
Download Length: 282 bp
>T217792 NZ_CP114802:15629-15979 [Citrobacter sp. 21OH12SH02A-Citro]
ATGTGGGTCATCGAGACAACCGACACCTTTGATGAGTGGTTCGATGCTCTGGATGATACCGATAGAGCAAACGTGCTGGC
TTCGATGATGGTGCTGCGAGATAGAGGCCCCATGCTGTCGAGGCCATACGCGGATACTGTTAACGGTTCATCCTACAGCA
ACATGAAAGAGCTTCGGGTCCAAAGCAAAGGAGATCCTATCAGAGCGTTCTTTGCGTTCGATCCAAAGCGTAAGGGGATT
CTTCTCTGCGCCGGTAACAAGACCGGGGACGAGAAAAGGTTTTATGAAGTAATGATCCCAATTGCAGACCGTGAGTTTGC
GGCGCACTTGGATAAATTGAAGAAGGAGTGA
ATGTGGGTCATCGAGACAACCGACACCTTTGATGAGTGGTTCGATGCTCTGGATGATACCGATAGAGCAAACGTGCTGGC
TTCGATGATGGTGCTGCGAGATAGAGGCCCCATGCTGTCGAGGCCATACGCGGATACTGTTAACGGTTCATCCTACAGCA
ACATGAAAGAGCTTCGGGTCCAAAGCAAAGGAGATCCTATCAGAGCGTTCTTTGCGTTCGATCCAAAGCGTAAGGGGATT
CTTCTCTGCGCCGGTAACAAGACCGGGGACGAGAAAAGGTTTTATGAAGTAATGATCCCAATTGCAGACCGTGAGTTTGC
GGCGCACTTGGATAAATTGAAGAAGGAGTGA
Antitoxin
Download Length: 97 a.a. Molecular weight: 10685.04 Da Isoelectric Point: 11.0594
>AT217792 WP_143898580.1 NZ_CP083911:c2872506-2872216 [Tepidimonas taiwanensis]
MSESTFTFRVDPALKSAFSAAAKKMDRNAAQLLRDFMRDVVRQQQETTAHDAWFRRAVQTGLDSANAGRLIPSAEVEARF
AAKRAATRQRLEAAAE
MSESTFTFRVDPALKSAFSAAAKKMDRNAAQLLRDFMRDVVRQQQETTAHDAWFRRAVQTGLDSANAGRLIPSAEVEARF
AAKRAATRQRLEAAAE
Download Length: 291 bp
>AT217792 NZ_CP114802:15984-16286 [Citrobacter sp. 21OH12SH02A-Citro]
ATGGCAAGAACTCTTGACCAAATGCTGGCAACAGAAAAGCCTGAGGTTGTTGCCAAAGCACAGAAAGCGGCCACTGAGAT
GTTACTGAACATCCACTTGGCAGAGCTTCGTGATCGCATGAACCTTACCCAGGGGGAAATTGCTGCATCTCTGGGTGTGA
GACAGCCGACAGTCTCCGAGATGGAAAAACCTGGACGAGATCTCAAGCTGTCGTCCATTAAGCGGTACGTTGAGGCCTCC
GGTGGCAAGCTACGCCTCGATGTTGAACTTCCGGACGGCACCCACTACGGCTTTGCCGTTTAA
ATGGCAAGAACTCTTGACCAAATGCTGGCAACAGAAAAGCCTGAGGTTGTTGCCAAAGCACAGAAAGCGGCCACTGAGAT
GTTACTGAACATCCACTTGGCAGAGCTTCGTGATCGCATGAACCTTACCCAGGGGGAAATTGCTGCATCTCTGGGTGTGA
GACAGCCGACAGTCTCCGAGATGGAAAAACCTGGACGAGATCTCAAGCTGTCGTCCATTAAGCGGTACGTTGAGGCCTCC
GGTGGCAAGCTACGCCTCGATGTTGAACTTCCGGACGGCACCCACTACGGCTTTGCCGTTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|