Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2062593..2062864 | Replicon | chromosome |
| Accession | NZ_CP083888 | ||
| Organism | Escherichia coli strain NDM1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2062723..2062826 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2062593..2062864 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCE25_RS09930 | 2059148..2059810 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LCE25_RS09935 | 2059834..2060490 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LCE25_RS09940 | 2060592..2060822 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LCE25_RS09945 | 2060961..2061335 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| LCE25_RS09950 | 2061339..2062211 | + | 873 | WP_000879334.1 | copper homeostasis membrane protein CopD | - |
| LCE25_RS09955 | 2062224..2062565 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2062593..2062864 | - | 272 | - | - | Antitoxin |
| - | 2062723..2062826 | + | 104 | - | - | Toxin |
| LCE25_RS09960 | 2062961..2063617 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LCE25_RS09965 | 2063618..2063809 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LCE25_RS09970 | 2063914..2064150 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LCE25_RS09975 | 2064268..2065707 | - | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217750 NZ_CP083888:2062723-2062826 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGGCCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGGCCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT217750 NZ_CP083888:c2062864-2062593 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGCCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGCCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
