Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2031704..2031975 | Replicon | chromosome |
| Accession | NZ_CP083886 | ||
| Organism | Escherichia coli strain NDM2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2031834..2031937 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2031704..2031975 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCE23_RS10750 | 2028259..2028921 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LCE23_RS10755 | 2028945..2029601 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LCE23_RS10760 | 2029703..2029933 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LCE23_RS10765 | 2030072..2030446 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LCE23_RS10770 | 2030450..2031322 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| LCE23_RS10775 | 2031335..2031676 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2031704..2031975 | - | 272 | - | - | Antitoxin |
| - | 2031834..2031937 | + | 104 | - | - | Toxin |
| LCE23_RS10780 | 2032072..2032728 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LCE23_RS10785 | 2032729..2032920 | - | 192 | WP_000457842.1 | YebW family protein | - |
| LCE23_RS10790 | 2033025..2033261 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LCE23_RS10795 | 2033379..2034818 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217728 NZ_CP083886:2031834-2031937 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT217728 NZ_CP083886:c2031975-2031704 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
