Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2007478..2007749 | Replicon | chromosome |
| Accession | NZ_CP083880 | ||
| Organism | Escherichia coli strain NDM3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2007608..2007711 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2007478..2007749 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCE26_RS09655 | 2004033..2004695 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LCE26_RS09660 | 2004719..2005375 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LCE26_RS09665 | 2005477..2005707 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LCE26_RS09670 | 2005846..2006220 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LCE26_RS09675 | 2006224..2007096 | + | 873 | WP_042346164.1 | copper homeostasis membrane protein CopD | - |
| LCE26_RS09680 | 2007109..2007450 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2007478..2007749 | - | 272 | - | - | Antitoxin |
| - | 2007608..2007711 | + | 104 | - | - | Toxin |
| LCE26_RS09685 | 2007846..2008502 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LCE26_RS09690 | 2008503..2008694 | - | 192 | WP_000457842.1 | YebW family protein | - |
| LCE26_RS09695 | 2008799..2009035 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LCE26_RS09700 | 2009153..2010592 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217689 NZ_CP083880:2007608-2007711 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT217689 NZ_CP083880:c2007749-2007478 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
