Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2007462..2007733 | Replicon | chromosome |
| Accession | NZ_CP083877 | ||
| Organism | Escherichia coli strain NDM4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2007592..2007695 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2007462..2007733 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCE22_RS09655 | 2004017..2004679 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LCE22_RS09660 | 2004703..2005359 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LCE22_RS09665 | 2005461..2005691 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LCE22_RS09670 | 2005830..2006204 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LCE22_RS09675 | 2006208..2007080 | + | 873 | WP_042346164.1 | copper homeostasis membrane protein CopD | - |
| LCE22_RS09680 | 2007093..2007434 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2007462..2007733 | - | 272 | - | - | Antitoxin |
| - | 2007592..2007695 | + | 104 | - | - | Toxin |
| LCE22_RS09685 | 2007830..2008486 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LCE22_RS09690 | 2008487..2008678 | - | 192 | WP_000457842.1 | YebW family protein | - |
| LCE22_RS09695 | 2008783..2009019 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LCE22_RS09700 | 2009137..2010576 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217662 NZ_CP083877:2007592-2007695 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT217662 NZ_CP083877:c2007733-2007462 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
