Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1930981..1931249 | Replicon | chromosome |
| Accession | NC_008563 | ||
| Organism | Escherichia coli APEC O1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1931019..1931121 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1930981..1931249 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APECO1_RS09825 | 1928138..1929577 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| APECO1_RS09830 | 1929695..1929931 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| APECO1_RS09835 | 1930036..1930227 | + | 192 | WP_001296140.1 | YebW family protein | - |
| APECO1_RS09840 | 1930228..1930884 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 1930981..1931249 | + | 269 | - | - | Antitoxin |
| - | 1931019..1931121 | - | 103 | - | - | Toxin |
| APECO1_RS09850 | 1931279..1931620 | - | 342 | WP_000984819.1 | YebY family protein | - |
| APECO1_RS09855 | 1931633..1932505 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| APECO1_RS09860 | 1932509..1932883 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| APECO1_RS09865 | 1933022..1933252 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| APECO1_RS09870 | 1933354..1934010 | + | 657 | Protein_1885 | carbon-nitrogen hydrolase family protein | - |
| APECO1_RS09875 | 1934033..1934695 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T21757 NC_008563:c1931121-1931019 [Escherichia coli APEC O1]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT21757 NC_008563:1930981-1931249 [Escherichia coli APEC O1]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
