Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2693640..2693794 | Replicon | chromosome |
| Accession | NZ_CP083857 | ||
| Organism | Enterobacter kobei strain 12379-yvys | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2693656..2693759 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2693640..2693794 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCD50_RS12770 (LCD50_12785) | 2689916..2691358 | + | 1443 | WP_032629037.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LCD50_RS12775 (LCD50_12790) | 2691465..2691704 | + | 240 | WP_008500472.1 | YebV family protein | - |
| LCD50_RS12780 (LCD50_12795) | 2691739..2692383 | - | 645 | WP_014884297.1 | protein-serine/threonine phosphatase | - |
| LCD50_RS12785 (LCD50_12800) | 2692551..2693492 | + | 942 | WP_213782453.1 | VirK/YbjX family protein | - |
| - | 2693640..2693794 | + | 155 | - | - | Antitoxin |
| - | 2693656..2693759 | - | 104 | - | - | Toxin |
| LCD50_RS12790 (LCD50_12805) | 2693898..2694236 | - | 339 | WP_014884299.1 | YebY family protein | - |
| LCD50_RS12795 (LCD50_12810) | 2694253..2695122 | - | 870 | WP_213782387.1 | copper homeostasis membrane protein CopD | - |
| LCD50_RS12800 (LCD50_12815) | 2695124..2695495 | - | 372 | WP_014884301.1 | CopC domain-containing protein YobA | - |
| LCD50_RS12805 (LCD50_12820) | 2695633..2695863 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| LCD50_RS12810 (LCD50_12825) | 2695974..2696624 | + | 651 | WP_014884302.1 | carbon-nitrogen hydrolase family protein | - |
| LCD50_RS12815 (LCD50_12830) | 2696649..2697311 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217569 NZ_CP083857:c2693759-2693656 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT217569 NZ_CP083857:2693640-2693794 [Enterobacter kobei]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
