Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2857307..2857450 | Replicon | chromosome |
| Accession | NZ_CP083853 | ||
| Organism | Enterobacter roggenkampii strain 12795-yvys | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2857312..2857415 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2857307..2857450 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCD45_RS13560 (LCD45_13585) | 2853563..2855005 | + | 1443 | WP_208558455.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LCD45_RS13565 (LCD45_13590) | 2855112..2855351 | + | 240 | WP_008500472.1 | YebV family protein | - |
| LCD45_RS13570 (LCD45_13595) | 2855386..2856030 | - | 645 | WP_045335027.1 | protein-serine/threonine phosphatase | - |
| LCD45_RS13575 (LCD45_13600) | 2856207..2857148 | + | 942 | WP_045335029.1 | VirK/YbjX family protein | - |
| - | 2857307..2857450 | + | 144 | - | - | Antitoxin |
| - | 2857312..2857415 | - | 104 | - | - | Toxin |
| LCD45_RS13580 (LCD45_13605) | 2857554..2857892 | - | 339 | WP_008500468.1 | YebY family protein | - |
| LCD45_RS13585 (LCD45_13610) | 2857909..2858778 | - | 870 | WP_008500467.1 | copper homeostasis membrane protein CopD | - |
| LCD45_RS13590 (LCD45_13615) | 2858780..2859151 | - | 372 | WP_008500466.1 | CopC domain-containing protein YobA | - |
| LCD45_RS13595 (LCD45_13620) | 2859289..2859519 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| LCD45_RS13600 (LCD45_13625) | 2859630..2860280 | + | 651 | WP_008500464.1 | carbon-nitrogen hydrolase family protein | - |
| LCD45_RS13605 (LCD45_13630) | 2860305..2860967 | + | 663 | WP_208558454.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217551 NZ_CP083853:c2857415-2857312 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT217551 NZ_CP083853:2857307-2857450 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
