Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 367223..367432 | Replicon | chromosome |
| Accession | NZ_CP083849 | ||
| Organism | Enterobacter hormaechei subsp. steigerwaltii strain 14269-yvys | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 367316..367419 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 367223..367432 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCD40_RS01930 (LCD40_01930) | 363760..364422 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| LCD40_RS01935 (LCD40_01935) | 364447..365097 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| LCD40_RS01940 (LCD40_01940) | 365209..365439 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LCD40_RS01945 (LCD40_01945) | 365577..365948 | + | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| LCD40_RS01950 (LCD40_01950) | 365950..366819 | + | 870 | WP_246928230.1 | copper homeostasis membrane protein CopD | - |
| LCD40_RS01955 (LCD40_01955) | 366836..367174 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 367223..367432 | - | 210 | - | - | Antitoxin |
| LCD40_RS01960 (LCD40_01960) | 367300..367497 | - | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 367316..367419 | + | 104 | - | - | Toxin |
| LCD40_RS01965 (LCD40_01965) | 367543..368523 | - | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| LCD40_RS01970 (LCD40_01970) | 368691..369335 | + | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| LCD40_RS01975 (LCD40_01975) | 369370..369609 | - | 240 | WP_003859885.1 | YebV family protein | - |
| LCD40_RS01980 (LCD40_01980) | 369716..371164 | - | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 301868..384852 | 82984 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217531 NZ_CP083849:367316-367419 [Enterobacter hormaechei subsp. steigerwaltii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT217531 NZ_CP083849:c367432-367223 [Enterobacter hormaechei subsp. steigerwaltii]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
