Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2758243..2758383 | Replicon | chromosome |
| Accession | NZ_CP083842 | ||
| Organism | Enterobacter asburiae strain 16773-yvys | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2758245..2758348 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2758243..2758383 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCD43_RS13275 (LCD43_13285) | 2755482..2755856 | - | 375 | WP_047635173.1 | hypothetical protein | - |
| LCD43_RS13280 (LCD43_13290) | 2755928..2756671 | - | 744 | WP_045404472.1 | DUF6246 family protein | - |
| LCD43_RS13285 (LCD43_13295) | 2757073..2758167 | + | 1095 | WP_226855180.1 | tyrosine-type recombinase/integrase | - |
| - | 2758243..2758383 | + | 141 | - | - | Antitoxin |
| - | 2758245..2758348 | - | 104 | - | - | Toxin |
| LCD43_RS13290 (LCD43_13300) | 2758487..2758825 | - | 339 | WP_045404471.1 | YebY family protein | - |
| LCD43_RS13295 (LCD43_13305) | 2758842..2759711 | - | 870 | WP_045404469.1 | copper homeostasis membrane protein CopD | - |
| LCD43_RS13300 (LCD43_13310) | 2759713..2760084 | - | 372 | WP_045355979.1 | CopC domain-containing protein YobA | - |
| LCD43_RS13305 (LCD43_13315) | 2760221..2760451 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| LCD43_RS13310 (LCD43_13320) | 2760562..2761212 | + | 651 | WP_045620326.1 | carbon-nitrogen hydrolase family protein | - |
| LCD43_RS13315 (LCD43_13325) | 2761237..2761899 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2724851..2764689 | 39838 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217516 NZ_CP083842:c2758348-2758245 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT217516 NZ_CP083842:2758243-2758383 [Enterobacter asburiae]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
