Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2832582..2832726 | Replicon | chromosome |
| Accession | NZ_CP083834 | ||
| Organism | Enterobacter asburiae strain AR0468-yvys | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2832588..2832691 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2832582..2832726 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCD48_RS13870 (LCD48_13865) | 2827739..2829187 | + | 1449 | WP_218054891.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LCD48_RS13875 (LCD48_13870) | 2829294..2829533 | + | 240 | WP_008500472.1 | YebV family protein | - |
| LCD48_RS13880 (LCD48_13875) | 2829568..2830212 | - | 645 | WP_045887980.1 | protein-serine/threonine phosphatase | - |
| LCD48_RS13885 (LCD48_13880) | 2830379..2831320 | + | 942 | WP_033145838.1 | VirK/YbjX family protein | - |
| LCD48_RS13890 (LCD48_13885) | 2831494..2832390 | + | 897 | WP_033145839.1 | benzoate transporter | - |
| - | 2832582..2832726 | + | 145 | - | - | Antitoxin |
| - | 2832588..2832691 | - | 104 | - | - | Toxin |
| LCD48_RS13895 (LCD48_13890) | 2832830..2833168 | - | 339 | WP_039263646.1 | YebY family protein | - |
| LCD48_RS13900 (LCD48_13895) | 2833185..2834054 | - | 870 | WP_045887979.1 | copper homeostasis membrane protein CopD | - |
| LCD48_RS13905 (LCD48_13900) | 2834056..2834427 | - | 372 | WP_045887978.1 | CopC domain-containing protein YobA | - |
| LCD48_RS13910 (LCD48_13905) | 2834564..2834794 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| LCD48_RS13915 (LCD48_13910) | 2834905..2835555 | + | 651 | WP_045887977.1 | carbon-nitrogen hydrolase family protein | - |
| LCD48_RS13920 (LCD48_13915) | 2835580..2836242 | + | 663 | WP_045887976.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217496 NZ_CP083834:c2832691-2832588 [Enterobacter asburiae]
GGCAAGGCTACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCTACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT217496 NZ_CP083834:2832582-2832726 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTAGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTAGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
