Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1988317..1988457 | Replicon | chromosome |
| Accession | NZ_CP083830 | ||
| Organism | Enterobacter asburiae strain AR2284-yvys | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1988352..1988455 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1988317..1988457 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCD44_RS09695 (LCD44_09715) | 1984801..1985463 | - | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
| LCD44_RS09700 (LCD44_09720) | 1985488..1986138 | - | 651 | WP_045620326.1 | carbon-nitrogen hydrolase family protein | - |
| LCD44_RS09705 (LCD44_09725) | 1986249..1986479 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| LCD44_RS09710 (LCD44_09730) | 1986616..1986987 | + | 372 | WP_045355979.1 | CopC domain-containing protein YobA | - |
| LCD44_RS09715 (LCD44_09735) | 1986989..1987858 | + | 870 | WP_045404469.1 | copper homeostasis membrane protein CopD | - |
| LCD44_RS09720 (LCD44_09740) | 1987875..1988213 | + | 339 | WP_045404471.1 | YebY family protein | - |
| - | 1988317..1988457 | - | 141 | - | - | Antitoxin |
| - | 1988352..1988455 | + | 104 | - | - | Toxin |
| LCD44_RS09725 (LCD44_09745) | 1988533..1989627 | - | 1095 | WP_226855180.1 | tyrosine-type recombinase/integrase | - |
| LCD44_RS09730 (LCD44_09750) | 1990029..1990772 | + | 744 | WP_045404472.1 | DUF6246 family protein | - |
| LCD44_RS09735 (LCD44_09755) | 1990844..1991218 | + | 375 | WP_047635173.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB / gtrA | 1982744..2006729 | 23985 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217477 NZ_CP083830:1988352-1988455 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT217477 NZ_CP083830:c1988457-1988317 [Enterobacter asburiae]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
