Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2801026..2801180 | Replicon | chromosome |
| Accession | NZ_CP083828 | ||
| Organism | Enterobacter kobei strain 11778-yvys | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2801042..2801145 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2801026..2801180 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCD42_RS13320 (LCD42_13345) | 2797303..2798745 | + | 1443 | WP_014884296.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LCD42_RS13325 (LCD42_13350) | 2798851..2799090 | + | 240 | WP_008500472.1 | YebV family protein | - |
| LCD42_RS13330 (LCD42_13355) | 2799125..2799769 | - | 645 | WP_176260804.1 | protein-serine/threonine phosphatase | - |
| LCD42_RS13335 (LCD42_13360) | 2799937..2800878 | + | 942 | WP_014884298.1 | VirK/YbjX family protein | - |
| - | 2801026..2801180 | + | 155 | - | - | Antitoxin |
| - | 2801042..2801145 | - | 104 | - | - | Toxin |
| LCD42_RS13340 (LCD42_13365) | 2801284..2801622 | - | 339 | WP_014884299.1 | YebY family protein | - |
| LCD42_RS13345 (LCD42_13370) | 2801639..2802508 | - | 870 | WP_176260803.1 | copper homeostasis membrane protein CopD | - |
| LCD42_RS13350 (LCD42_13375) | 2802510..2802881 | - | 372 | WP_023338431.1 | CopC domain-containing protein YobA | - |
| LCD42_RS13355 (LCD42_13380) | 2803019..2803249 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| LCD42_RS13360 (LCD42_13385) | 2803360..2804010 | + | 651 | WP_014884302.1 | carbon-nitrogen hydrolase family protein | - |
| LCD42_RS13365 (LCD42_13390) | 2804035..2804697 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217462 NZ_CP083828:c2801145-2801042 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT217462 NZ_CP083828:2801026-2801180 [Enterobacter kobei]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
