Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2770005..2770156 | Replicon | chromosome |
| Accession | NZ_CP083821 | ||
| Organism | Enterobacter cloacae subsp. cloacae strain 12961-yvys | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2770018..2770121 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2770005..2770156 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCD47_RS13205 (LCD47_13230) | 2766281..2767723 | + | 1443 | WP_139936312.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LCD47_RS13210 (LCD47_13235) | 2767829..2768068 | + | 240 | WP_013096113.1 | YebV family protein | - |
| LCD47_RS13215 (LCD47_13240) | 2768102..2768746 | - | 645 | WP_139936313.1 | protein-serine/threonine phosphatase | - |
| LCD47_RS13220 (LCD47_13245) | 2768913..2769854 | + | 942 | WP_058678592.1 | VirK/YbjX family protein | - |
| - | 2770005..2770156 | + | 152 | - | - | Antitoxin |
| - | 2770018..2770121 | - | 104 | - | - | Toxin |
| LCD47_RS13225 (LCD47_13250) | 2770261..2770599 | - | 339 | WP_128310471.1 | YebY family protein | - |
| LCD47_RS13230 (LCD47_13255) | 2770616..2771485 | - | 870 | WP_139936314.1 | copper homeostasis membrane protein CopD | - |
| LCD47_RS13235 (LCD47_13260) | 2771487..2771858 | - | 372 | WP_020690820.1 | CopC domain-containing protein YobA | - |
| LCD47_RS13240 (LCD47_13265) | 2771996..2772226 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| LCD47_RS13245 (LCD47_13270) | 2772336..2772986 | + | 651 | WP_139936315.1 | carbon-nitrogen hydrolase family protein | - |
| LCD47_RS13250 (LCD47_13275) | 2773010..2773672 | + | 663 | WP_020690817.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217447 NZ_CP083821:c2770121-2770018 [Enterobacter cloacae subsp. cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT217447 NZ_CP083821:2770005-2770156 [Enterobacter cloacae subsp. cloacae]
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
