Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2656446..2656590 | Replicon | chromosome |
| Accession | NZ_CP083815 | ||
| Organism | Enterobacter asburiae strain 161373-yvys | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2656452..2656555 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2656446..2656590 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCD39_RS13150 (LCD39_13165) | 2652405..2653385 | + | 981 | WP_197228368.1 | IS5-like element ISKpn26 family transposase | - |
| LCD39_RS13155 (LCD39_13170) | 2653997..2654965 | + | 969 | WP_013087110.1 | IS5-like element IS903B family transposase | - |
| LCD39_RS13160 (LCD39_13175) | 2655946..2656374 | + | 429 | WP_246948116.1 | tyrosine-type recombinase/integrase | - |
| - | 2656446..2656590 | + | 145 | - | - | Antitoxin |
| - | 2656452..2656555 | - | 104 | - | - | Toxin |
| LCD39_RS13165 (LCD39_13180) | 2656694..2657032 | - | 339 | WP_246946331.1 | YebY family protein | - |
| LCD39_RS13170 (LCD39_13185) | 2657049..2657918 | - | 870 | WP_087822782.1 | copper homeostasis membrane protein CopD | - |
| LCD39_RS13175 (LCD39_13190) | 2657920..2658291 | - | 372 | WP_213729597.1 | CopC domain-containing protein YobA | - |
| LCD39_RS13180 (LCD39_13195) | 2658428..2658658 | + | 231 | WP_064672722.1 | DNA polymerase III subunit theta | - |
| LCD39_RS13185 (LCD39_13200) | 2658769..2659419 | + | 651 | WP_033145843.1 | carbon-nitrogen hydrolase family protein | - |
| LCD39_RS13190 (LCD39_13205) | 2659444..2660106 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2624381..2677398 | 53017 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217413 NZ_CP083815:c2656555-2656452 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATAGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATAGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT217413 NZ_CP083815:2656446-2656590 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACTATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACTATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
