Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1696883..1696969 Replicon chromosome
Accession NZ_CP083809
Organism Pantoea agglomerans strain 33.1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1696883..1696969 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1696883..1696969 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LB453_RS10645 (LB453_10620) 1691999..1694062 + 2064 WP_103796064.1 prolyl oligopeptidase family serine peptidase -
LB453_RS10650 (LB453_10625) 1694056..1694724 - 669 WP_103796063.1 exodeoxyribonuclease X -
LB453_RS10655 (LB453_10630) 1694728..1694958 - 231 WP_103796062.1 DNA polymerase III subunit theta -
LB453_RS10660 (LB453_10635) 1695110..1695475 + 366 WP_103796061.1 copper homeostasis periplasmic binding protein CopC -
LB453_RS10665 (LB453_10640) 1695479..1696354 + 876 WP_146053831.1 copper homeostasis membrane protein CopD -
LB453_RS10670 (LB453_10645) 1696390..1696737 + 348 WP_103796060.1 YebY family protein -
- 1696883..1696969 + 87 - - Toxin
LB453_RS10675 (LB453_10650) 1697088..1697249 - 162 WP_224481726.1 tyrosine-type recombinase/integrase -
LB453_RS10680 (LB453_10655) 1697266..1697574 - 309 WP_224481727.1 tyrosine-type recombinase/integrase -
LB453_RS10685 (LB453_10660) 1698237..1698866 + 630 WP_103796058.1 hypothetical protein -
LB453_RS10690 (LB453_10665) 1699392..1700282 + 891 WP_103796057.1 benzoate transporter -
LB453_RS10695 (LB453_10670) 1700629..1701486 + 858 WP_103796056.1 manganese catalase family protein -
LB453_RS10700 (LB453_10675) 1701724..1701930 - 207 WP_103796055.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 87 bp

>T217394 NZ_CP083809:1696883-1696969 [Pantoea agglomerans]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCAAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTGTTCGGTC
TTTTTTT

Antitoxin


Download         Length: 87 bp

>AT217394 NZ_CP083809:c1696969-1696883 [Pantoea agglomerans]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTTGAGAGCCGTGCGCTAAAAGTTGGCATTAA
TGCAGGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References