217359

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1911187..1911332 Replicon chromosome
Accession NZ_CP083796
Organism Klebsiella pneumoniae strain INF019 isolate INF019

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1911223..1911325 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1911187..1911332 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LB481_RS09240 1906317..1908377 + 2061 WP_004151449.1 oligopeptidase B -
LB481_RS09245 1908381..1909040 - 660 WP_002911407.1 exodeoxyribonuclease X -
LB481_RS09250 1909119..1909349 - 231 WP_002911406.1 DNA polymerase III subunit theta -
LB481_RS09255 1909462..1909836 + 375 WP_004151448.1 CopC domain-containing protein YobA -
LB481_RS09260 1909840..1910709 + 870 WP_009307538.1 copper homeostasis membrane protein CopD -
LB481_RS09265 1910726..1911064 + 339 WP_009307539.1 YebY family protein -
- 1911187..1911332 - 146 - - Antitoxin
- 1911223..1911325 + 103 - - Toxin
LB481_RS09270 1911701..1911844 - 144 WP_002911398.1 Ecr family regulatory small membrane protein -
LB481_RS09275 1911952..1912917 - 966 Protein_1805 VirK/YbjX family protein -
LB481_RS09280 1913074..1913727 + 654 WP_009307541.1 protein-serine/threonine phosphatase -
LB481_RS09285 1913724..1913915 - 192 WP_002911395.1 YebW family protein -
LB481_RS09290 1914013..1914252 - 240 WP_002911393.1 YebV family protein -
LB481_RS09295 1914368..1915801 - 1434 WP_004148845.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 103 bp

>T217359 NZ_CP083796:1911223-1911325 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT217359 NZ_CP083796:c1911332-1911187 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References