Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1945352..1945496 | Replicon | chromosome |
| Accession | NZ_CP083790 | ||
| Organism | Klebsiella variicola strain INF352 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1945388..1945490 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1945352..1945496 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LB484_RS09525 (LB484_09525) | 1940481..1942541 | + | 2061 | WP_008804266.1 | oligopeptidase B | - |
| LB484_RS09530 (LB484_09530) | 1942545..1943204 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| LB484_RS09535 (LB484_09535) | 1943283..1943513 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| LB484_RS09540 (LB484_09540) | 1943627..1944001 | + | 375 | WP_023340401.1 | CopC domain-containing protein YobA | - |
| LB484_RS09545 (LB484_09545) | 1944005..1944874 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| LB484_RS09550 (LB484_09550) | 1944891..1945229 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1945352..1945496 | - | 145 | - | - | Antitoxin |
| - | 1945388..1945490 | + | 103 | - | - | Toxin |
| LB484_RS09555 (LB484_09555) | 1945875..1946018 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| LB484_RS09560 (LB484_09560) | 1946122..1947090 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| LB484_RS09565 (LB484_09565) | 1947247..1947900 | + | 654 | WP_022066249.1 | protein-serine/threonine phosphatase | - |
| LB484_RS09570 (LB484_09570) | 1947897..1948088 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LB484_RS09575 (LB484_09575) | 1948186..1948425 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LB484_RS09580 (LB484_09580) | 1948541..1949974 | - | 1434 | WP_012967754.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T217341 NZ_CP083790:1945388-1945490 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT217341 NZ_CP083790:c1945496-1945352 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
