Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 445025..445165 | Replicon | chromosome |
| Accession | NZ_CP083754 | ||
| Organism | Serratia marcescens strain YL4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 445069..445165 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 445025..445165 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LBP97_RS02060 (LBP97_02060) | 440295..440690 | + | 396 | WP_049203470.1 | RidA family protein | - |
| LBP97_RS02065 (LBP97_02065) | 440847..441800 | + | 954 | WP_025302447.1 | prolyl aminopeptidase | - |
| LBP97_RS02070 (LBP97_02070) | 441831..442061 | - | 231 | WP_043141621.1 | DNA polymerase III subunit theta | - |
| LBP97_RS02075 (LBP97_02075) | 442406..442924 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| LBP97_RS02080 (LBP97_02080) | 443249..443632 | + | 384 | WP_025302450.1 | CopC domain-containing protein YobA | - |
| LBP97_RS02085 (LBP97_02085) | 443635..444516 | + | 882 | WP_049209425.1 | copper homeostasis membrane protein CopD | - |
| LBP97_RS02090 (LBP97_02090) | 444586..444927 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 445025..445165 | - | 141 | - | - | Antitoxin |
| - | 445069..445165 | + | 97 | - | - | Toxin |
| LBP97_RS02095 (LBP97_02095) | 445280..445501 | - | 222 | WP_080352611.1 | tyrosine-type recombinase/integrase | - |
| LBP97_RS02100 (LBP97_02100) | 445549..446607 | + | 1059 | WP_238969255.1 | acyltransferase | - |
| LBP97_RS02105 (LBP97_02105) | 447282..448514 | + | 1233 | WP_238969256.1 | hypothetical protein | - |
| LBP97_RS02110 (LBP97_02110) | 448881..449288 | + | 408 | WP_049209427.1 | hypothetical protein | - |
| LBP97_RS02115 (LBP97_02115) | 449424..449774 | + | 351 | WP_025302454.1 | DUF4377 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T217245 NZ_CP083754:445069-445165 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT217245 NZ_CP083754:c445165-445025 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAATAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAATAGCCTACCGCGCCAGTTTTGCCAG
