Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1883798..1883943 | Replicon | chromosome |
| Accession | NZ_CP083751 | ||
| Organism | Klebsiella pneumoniae strain FAHZZU2591 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1883834..1883936 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1883798..1883943 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LBE00_RS09075 (LBE00_09090) | 1878928..1880988 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LBE00_RS09080 (LBE00_09095) | 1880992..1881651 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LBE00_RS09085 (LBE00_09100) | 1881730..1881960 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LBE00_RS09090 (LBE00_09105) | 1882073..1882447 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LBE00_RS09095 (LBE00_09110) | 1882451..1883320 | + | 870 | WP_048331959.1 | copper homeostasis membrane protein CopD | - |
| LBE00_RS09100 (LBE00_09115) | 1883337..1883675 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1883798..1883943 | - | 146 | - | - | Antitoxin |
| - | 1883834..1883936 | + | 103 | - | - | Toxin |
| LBE00_RS09105 (LBE00_09120) | 1884312..1884455 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LBE00_RS09110 (LBE00_09125) | 1884560..1885528 | - | 969 | WP_074185275.1 | VirK/YbjX family protein | - |
| LBE00_RS09115 (LBE00_09130) | 1885685..1886338 | + | 654 | WP_032447686.1 | protein-serine/threonine phosphatase | - |
| LBE00_RS09120 (LBE00_09135) | 1886335..1886526 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LBE00_RS09125 (LBE00_09140) | 1886624..1886863 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LBE00_RS09130 (LBE00_09145) | 1886979..1888412 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T217226 NZ_CP083751:1883834-1883936 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT217226 NZ_CP083751:c1883943-1883798 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
