Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2035713..2035856 | Replicon | chromosome |
| Accession | NZ_CP083731 | ||
| Organism | Salmonella sp. A29-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2035751..2035854 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2035713..2035856 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8W53_RS09890 | 2032137..2032835 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K8W53_RS09895 | 2032859..2033515 | - | 657 | WP_000100249.1 | carbon-nitrogen hydrolase family protein | - |
| K8W53_RS09900 | 2033623..2033853 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K8W53_RS09905 | 2033991..2034365 | + | 375 | WP_023205606.1 | CopC domain-containing protein YobA | - |
| K8W53_RS09910 | 2034366..2035241 | + | 876 | WP_023223935.1 | copper homeostasis membrane protein CopD | - |
| K8W53_RS09915 | 2035258..2035611 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2035713..2035856 | - | 144 | - | - | Antitoxin |
| - | 2035751..2035854 | + | 104 | - | - | Toxin |
| K8W53_RS09920 | 2035985..2036332 | - | 348 | Protein_1934 | tyrosine-type recombinase/integrase | - |
| K8W53_RS09925 | 2036344..2036427 | + | 84 | Protein_1935 | phage tail protein | - |
| K8W53_RS09930 | 2036601..2038205 | + | 1605 | Protein_1936 | NEL-type E3 ubiquitin ligase domain-containing protein | - |
| K8W53_RS09935 | 2038288..2039460 | + | 1173 | WP_000952349.1 | IS21-like element IS21 family transposase | - |
| K8W53_RS09940 | 2039460..2040257 | + | 798 | WP_000544828.1 | IS21-like element IS21 family helper ATPase IstB | - |
| K8W53_RS09945 | 2040325..2040669 | + | 345 | Protein_1939 | NEL-type E3 ubiquitin ligase domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sspH1 / sspH2 / sopE2 | 2013843..2070009 | 56166 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217180 NZ_CP083731:2035751-2035854 [Salmonella sp. A29-2]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT217180 NZ_CP083731:c2035856-2035713 [Salmonella sp. A29-2]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
