Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 454564..454708 | Replicon | chromosome |
| Accession | NZ_CP083709 | ||
| Organism | Enterobacter cloacae complex sp. ECL352 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 454570..454673 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 454564..454708 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LBF07_RS02090 (LBF07_02090) | 449721..451169 | + | 1449 | WP_205742266.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LBF07_RS02095 (LBF07_02095) | 451276..451515 | + | 240 | WP_008500472.1 | YebV family protein | - |
| LBF07_RS02100 (LBF07_02100) | 451550..452194 | - | 645 | WP_094935589.1 | protein-serine/threonine phosphatase | - |
| LBF07_RS02105 (LBF07_02105) | 452361..453302 | + | 942 | WP_094935590.1 | VirK/YbjX family protein | - |
| LBF07_RS02110 (LBF07_02110) | 453476..454372 | + | 897 | WP_094935591.1 | benzoate transporter | - |
| - | 454564..454708 | + | 145 | - | - | Antitoxin |
| - | 454570..454673 | - | 104 | - | - | Toxin |
| LBF07_RS02115 (LBF07_02115) | 454812..455150 | - | 339 | WP_033145840.1 | YebY family protein | - |
| LBF07_RS02120 (LBF07_02120) | 455167..456036 | - | 870 | WP_094935592.1 | copper homeostasis membrane protein CopD | - |
| LBF07_RS02125 (LBF07_02125) | 456038..456409 | - | 372 | WP_094935593.1 | CopC domain-containing protein YobA | - |
| LBF07_RS02130 (LBF07_02130) | 456546..456776 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| LBF07_RS02135 (LBF07_02135) | 456887..457537 | + | 651 | WP_033145843.1 | carbon-nitrogen hydrolase family protein | - |
| LBF07_RS02140 (LBF07_02140) | 457562..458224 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217137 NZ_CP083709:c454673-454570 [Enterobacter cloacae complex sp. ECL352]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT217137 NZ_CP083709:454564-454708 [Enterobacter cloacae complex sp. ECL352]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
