Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1925700..1925849 | Replicon | chromosome |
| Accession | NZ_CP083651 | ||
| Organism | Citrobacter amalonaticus strain FDAARGOS_1489 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1925706..1925809 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1925700..1925849 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA348_RS09015 (LA348_09015) | 1922809..1924248 | + | 1440 | WP_061070014.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LA348_RS09020 (LA348_09020) | 1924363..1924599 | + | 237 | WP_161215572.1 | YebV family protein | - |
| LA348_RS09025 (LA348_09025) | 1924701..1924892 | + | 192 | WP_043000391.1 | YebW family protein | - |
| LA348_RS09030 (LA348_09030) | 1924893..1925555 | - | 663 | WP_043000390.1 | protein-serine/threonine phosphatase | - |
| - | 1925700..1925849 | + | 150 | - | - | Antitoxin |
| - | 1925706..1925809 | - | 104 | - | - | Toxin |
| LA348_RS09035 (LA348_09035) | 1925965..1926303 | - | 339 | WP_043000379.1 | YebY family protein | - |
| LA348_RS09040 (LA348_09040) | 1926320..1927192 | - | 873 | WP_061070013.1 | copper homeostasis membrane protein CopD | - |
| LA348_RS09045 (LA348_09045) | 1927195..1927569 | - | 375 | WP_044326804.1 | CopC domain-containing protein YobA | - |
| LA348_RS09050 (LA348_09050) | 1927707..1927937 | + | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
| LA348_RS09055 (LA348_09055) | 1928046..1928708 | + | 663 | WP_061070012.1 | carbon-nitrogen hydrolase family protein | - |
| LA348_RS09060 (LA348_09060) | 1928732..1929394 | + | 663 | WP_043000375.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217026 NZ_CP083651:c1925809-1925706 [Citrobacter amalonaticus]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 150 bp
>AT217026 NZ_CP083651:1925700-1925849 [Citrobacter amalonaticus]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
