Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1669858..1670000 | Replicon | chromosome |
| Accession | NZ_CP083643 | ||
| Organism | Enterobacter bugandensis strain FDAARGOS_1496 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1669893..1669996 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1669858..1670000 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA326_RS07870 (LA326_07870) | 1666341..1667003 | - | 663 | WP_025756911.1 | exodeoxyribonuclease X | - |
| LA326_RS07875 (LA326_07875) | 1667028..1667678 | - | 651 | WP_045260312.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| LA326_RS07880 (LA326_07880) | 1667789..1668019 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| LA326_RS07885 (LA326_07885) | 1668156..1668527 | + | 372 | WP_045260311.1 | CopC domain-containing protein YobA | - |
| LA326_RS07890 (LA326_07890) | 1668529..1669398 | + | 870 | WP_088205057.1 | copper homeostasis membrane protein CopD | - |
| LA326_RS07895 (LA326_07895) | 1669415..1669753 | + | 339 | WP_028013604.1 | YebY family protein | - |
| - | 1669858..1670000 | - | 143 | - | - | Antitoxin |
| - | 1669893..1669996 | + | 104 | - | - | Toxin |
| LA326_RS07900 (LA326_07900) | 1670195..1671070 | - | 876 | WP_088205094.1 | benzoate transporter | - |
| LA326_RS07905 (LA326_07905) | 1671243..1672184 | - | 942 | WP_028013548.1 | VirK/YbjX family protein | - |
| LA326_RS07910 (LA326_07910) | 1672353..1672997 | + | 645 | WP_041909471.1 | protein-serine/threonine phosphatase | - |
| LA326_RS07915 (LA326_07915) | 1673032..1673271 | - | 240 | WP_008500472.1 | YebV family protein | - |
| LA326_RS07920 (LA326_07920) | 1673377..1674825 | - | 1449 | WP_197710704.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217006 NZ_CP083643:1669893-1669996 [Enterobacter bugandensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT217006 NZ_CP083643:c1670000-1669858 [Enterobacter bugandensis]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
