Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2678136..2678278 | Replicon | chromosome |
| Accession | NZ_CP083641 | ||
| Organism | Enterobacter bugandensis strain FDAARGOS_1497 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2678140..2678243 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2678136..2678278 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA318_RS12770 (LA318_12770) | 2673311..2674759 | + | 1449 | WP_197710704.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LA318_RS12775 (LA318_12775) | 2674865..2675104 | + | 240 | WP_008500472.1 | YebV family protein | - |
| LA318_RS12780 (LA318_12780) | 2675139..2675783 | - | 645 | WP_041909471.1 | protein-serine/threonine phosphatase | - |
| LA318_RS12785 (LA318_12785) | 2675952..2676893 | + | 942 | WP_028013548.1 | VirK/YbjX family protein | - |
| LA318_RS12790 (LA318_12790) | 2677066..2677941 | + | 876 | WP_088205094.1 | benzoate transporter | - |
| - | 2678136..2678278 | + | 143 | - | - | Antitoxin |
| - | 2678140..2678243 | - | 104 | - | - | Toxin |
| LA318_RS12795 (LA318_12795) | 2678383..2678721 | - | 339 | WP_028013604.1 | YebY family protein | - |
| LA318_RS12800 (LA318_12800) | 2678738..2679607 | - | 870 | WP_088205057.1 | copper homeostasis membrane protein CopD | - |
| LA318_RS12805 (LA318_12805) | 2679609..2679980 | - | 372 | WP_045260311.1 | CopC domain-containing protein YobA | - |
| LA318_RS12810 (LA318_12810) | 2680117..2680347 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| LA318_RS12815 (LA318_12815) | 2680458..2681108 | + | 651 | WP_045260312.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| LA318_RS12820 (LA318_12820) | 2681133..2681795 | + | 663 | WP_025756911.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216994 NZ_CP083641:c2678243-2678140 [Enterobacter bugandensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT216994 NZ_CP083641:2678136-2678278 [Enterobacter bugandensis]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
