Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3394358..3394510 | Replicon | chromosome |
| Accession | NZ_CP083640 | ||
| Organism | Enterobacter ludwigii strain FDAARGOS_1498 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3394372..3394475 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3394358..3394510 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA317_RS16380 (LA317_16380) | 3390632..3392074 | + | 1443 | WP_108648156.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LA317_RS16385 (LA317_16385) | 3392180..3392419 | + | 240 | WP_020883412.1 | YebV family protein | - |
| LA317_RS16390 (LA317_16390) | 3392454..3393098 | - | 645 | WP_068794734.1 | protein-serine/threonine phosphatase | - |
| LA317_RS16395 (LA317_16395) | 3393266..3394207 | + | 942 | WP_047356858.1 | VirK/YbjX family protein | - |
| - | 3394358..3394510 | + | 153 | - | - | Antitoxin |
| - | 3394372..3394475 | - | 104 | - | - | Toxin |
| LA317_RS16400 (LA317_16400) | 3394614..3394952 | - | 339 | WP_014170622.1 | YebY family protein | - |
| LA317_RS16405 (LA317_16405) | 3394969..3395838 | - | 870 | WP_223399056.1 | copper homeostasis membrane protein CopD | - |
| LA317_RS16410 (LA317_16410) | 3395840..3396211 | - | 372 | WP_063858489.1 | CopC domain-containing protein YobA | - |
| LA317_RS16415 (LA317_16415) | 3396349..3396579 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| LA317_RS16420 (LA317_16420) | 3396689..3397339 | + | 651 | WP_063858490.1 | carbon-nitrogen hydrolase family protein | - |
| LA317_RS16425 (LA317_16425) | 3397364..3398026 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216982 NZ_CP083640:c3394475-3394372 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT216982 NZ_CP083640:3394358-3394510 [Enterobacter ludwigii]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
