Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1608053..1608321 | Replicon | chromosome |
| Accession | NZ_CP083638 | ||
| Organism | Escherichia fergusonii strain FDAARGOS_1499 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1608091..1608194 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1608053..1608321 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA347_RS07840 | 1605209..1606648 | + | 1440 | WP_015953343.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LA347_RS07845 | 1606767..1607003 | + | 237 | WP_002431586.1 | YebV family protein | - |
| LA347_RS07850 | 1607108..1607299 | + | 192 | WP_002431587.1 | YebW family protein | - |
| LA347_RS07855 | 1607300..1607956 | - | 657 | WP_000812748.1 | protein-serine/threonine phosphatase | - |
| - | 1608053..1608321 | + | 269 | - | - | Antitoxin |
| - | 1608091..1608194 | - | 104 | - | - | Toxin |
| LA347_RS07860 | 1608351..1608692 | - | 342 | WP_000976176.1 | YebY family protein | - |
| LA347_RS07865 | 1608704..1609576 | - | 873 | WP_000928497.1 | copper homeostasis membrane protein CopD | - |
| LA347_RS07870 | 1609579..1609953 | - | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| LA347_RS07875 | 1610092..1610322 | + | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| LA347_RS07880 | 1610412..1611086 | + | 675 | WP_000824159.1 | carbon-nitrogen hydrolase family protein | - |
| LA347_RS07885 | 1611110..1611772 | + | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216957 NZ_CP083638:c1608194-1608091 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT216957 NZ_CP083638:1608053-1608321 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
