Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 739258..739405 | Replicon | chromosome |
| Accession | NZ_CP083633 | ||
| Organism | Klebsiella quasipneumoniae strain FDAARGOS_1503 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 739262..739364 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 739258..739405 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA349_RS03610 | 734790..736220 | + | 1431 | WP_044523969.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LA349_RS03615 | 736336..736575 | + | 240 | WP_044523970.1 | YebV family protein | - |
| LA349_RS03620 | 736673..736864 | + | 192 | WP_002911395.1 | YebW family protein | - |
| LA349_RS03625 | 736861..737514 | - | 654 | WP_044523971.1 | protein-serine/threonine phosphatase | - |
| LA349_RS03630 | 737671..738639 | + | 969 | WP_072413392.1 | VirK/YbjX family protein | - |
| LA349_RS03635 | 738740..738883 | + | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| - | 739258..739405 | + | 148 | - | - | Antitoxin |
| - | 739262..739364 | - | 103 | - | - | Toxin |
| LA349_RS03640 | 739523..739861 | - | 339 | WP_002911404.1 | YebY family protein | - |
| LA349_RS03645 | 739878..740747 | - | 870 | WP_044523974.1 | copper homeostasis membrane protein CopD | - |
| LA349_RS03650 | 740751..741125 | - | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| LA349_RS03655 | 741238..741468 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LA349_RS03660 | 741547..742206 | + | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| LA349_RS03665 | 742210..744270 | - | 2061 | WP_044523975.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T216939 NZ_CP083633:c739364-739262 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT216939 NZ_CP083633:739258-739405 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
