Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1846168..1846310 | Replicon | chromosome |
| Accession | NZ_CP083620 | ||
| Organism | Enterobacter bugandensis strain FDAARGOS_1520 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1846203..1846306 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1846168..1846310 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA316_RS08695 (LA316_08695) | 1842651..1843313 | - | 663 | WP_025756911.1 | exodeoxyribonuclease X | - |
| LA316_RS08700 (LA316_08700) | 1843338..1843988 | - | 651 | WP_045260312.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| LA316_RS08705 (LA316_08705) | 1844099..1844329 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| LA316_RS08710 (LA316_08710) | 1844466..1844837 | + | 372 | WP_045260311.1 | CopC domain-containing protein YobA | - |
| LA316_RS08715 (LA316_08715) | 1844839..1845708 | + | 870 | WP_088205057.1 | copper homeostasis membrane protein CopD | - |
| LA316_RS08720 (LA316_08720) | 1845725..1846063 | + | 339 | WP_028013604.1 | YebY family protein | - |
| - | 1846168..1846310 | - | 143 | - | - | Antitoxin |
| - | 1846203..1846306 | + | 104 | - | - | Toxin |
| LA316_RS08725 (LA316_08725) | 1846505..1847380 | - | 876 | WP_088205094.1 | benzoate transporter | - |
| LA316_RS08730 (LA316_08730) | 1847553..1848494 | - | 942 | WP_028013548.1 | VirK/YbjX family protein | - |
| LA316_RS08735 (LA316_08735) | 1848663..1849307 | + | 645 | WP_041909471.1 | protein-serine/threonine phosphatase | - |
| LA316_RS08740 (LA316_08740) | 1849342..1849581 | - | 240 | WP_008500472.1 | YebV family protein | - |
| LA316_RS08745 (LA316_08745) | 1849687..1851135 | - | 1449 | WP_197710704.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216890 NZ_CP083620:1846203-1846306 [Enterobacter bugandensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT216890 NZ_CP083620:c1846310-1846168 [Enterobacter bugandensis]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
