Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3046099..3046300 | Replicon | chromosome |
| Accession | NZ_CP083613 | ||
| Organism | Enterobacter hormaechei subsp. oharae strain FDAARGOS_1533 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3046104..3046207 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3046099..3046300 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA353_RS14660 (LA353_14655) | 3042359..3043807 | + | 1449 | WP_196362492.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LA353_RS14665 (LA353_14660) | 3043914..3044153 | + | 240 | WP_006811010.1 | YebV family protein | - |
| LA353_RS14670 (LA353_14665) | 3044188..3044832 | - | 645 | WP_047051763.1 | protein-serine/threonine phosphatase | - |
| LA353_RS14675 (LA353_14670) | 3045000..3045980 | + | 981 | WP_047051764.1 | VirK/YbjX family protein | - |
| LA353_RS14680 (LA353_14675) | 3046026..3046223 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 3046099..3046300 | + | 202 | - | - | Antitoxin |
| - | 3046104..3046207 | - | 104 | - | - | Toxin |
| LA353_RS14685 (LA353_14680) | 3046348..3046686 | - | 339 | WP_003859787.1 | YebY family protein | - |
| LA353_RS14690 (LA353_14685) | 3046703..3047572 | - | 870 | WP_048982486.1 | copper homeostasis membrane protein CopD | - |
| LA353_RS14695 (LA353_14690) | 3047574..3047945 | - | 372 | WP_047051768.1 | CopC domain-containing protein YobA | - |
| LA353_RS14700 (LA353_14695) | 3048083..3048313 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LA353_RS14705 (LA353_14700) | 3048425..3049075 | + | 651 | WP_048982489.1 | carbon-nitrogen hydrolase family protein | - |
| LA353_RS14710 (LA353_14705) | 3049100..3049762 | + | 663 | WP_047051600.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216867 NZ_CP083613:c3046207-3046104 [Enterobacter hormaechei subsp. oharae]
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT216867 NZ_CP083613:3046099-3046300 [Enterobacter hormaechei subsp. oharae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
