Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3046099..3046300 Replicon chromosome
Accession NZ_CP083613
Organism Enterobacter hormaechei subsp. oharae strain FDAARGOS_1533

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3046104..3046207 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3046099..3046300 (+)

Genomic Context

LA353_RS14660LA353_RS14665LA353_RS14675LA353_RS14680--LA353_RS14700LA353_RS14705LA353_RS14710LA353_RS14670--LA353_RS14685LA353_RS14690LA353_RS14695
Location: 3042359..3043807 (1449 bp)
Type: Others
Protein ID: WP_196362492.1
Location: 3043914..3044153 (240 bp)
Type: Others
Protein ID: WP_006811010.1
Location: 3045000..3045980 (981 bp)
Type: Others
Protein ID: WP_047051764.1
Location: 3046026..3046223 (198 bp)
Type: Others
Protein ID: WP_032609507.1
Location: 3046099..3046300 (202 bp)
Type: Antitoxin
Protein ID: -
Location: 3048083..3048313 (231 bp)
Type: Others
Protein ID: WP_003859784.1
Location: 3048425..3049075 (651 bp)
Type: Others
Protein ID: WP_048982489.1
Location: 3049100..3049762 (663 bp)
Type: Others
Protein ID: WP_047051600.1
Location: 3044188..3044832 (645 bp)
Type: Others
Protein ID: WP_047051763.1
Location: 3046104..3046207 (104 bp)
Type: Toxin
Protein ID: -
Location: 3046348..3046686 (339 bp)
Type: Others
Protein ID: WP_003859787.1
Location: 3046703..3047572 (870 bp)
Type: Others
Protein ID: WP_048982486.1
Location: 3047574..3047945 (372 bp)
Type: Others
Protein ID: WP_047051768.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
LA353_RS14660 (LA353_14655)3042359..3043807+1449WP_196362492.116S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF-
LA353_RS14665 (LA353_14660)3043914..3044153+240WP_006811010.1YebV family protein-
LA353_RS14670 (LA353_14665)3044188..3044832-645WP_047051763.1protein-serine/threonine phosphatase-
LA353_RS14675 (LA353_14670)3045000..3045980+981WP_047051764.1VirK/YbjX family protein-
LA353_RS14680 (LA353_14675)3046026..3046223+198WP_032609507.1hypothetical protein-
-3046099..3046300+202--Antitoxin
-3046104..3046207-104--Toxin
LA353_RS14685 (LA353_14680)3046348..3046686-339WP_003859787.1YebY family protein-
LA353_RS14690 (LA353_14685)3046703..3047572-870WP_048982486.1copper homeostasis membrane protein CopD-
LA353_RS14695 (LA353_14690)3047574..3047945-372WP_047051768.1CopC domain-containing protein YobA-
LA353_RS14700 (LA353_14695)3048083..3048313+231WP_003859784.1DNA polymerase III subunit theta-
LA353_RS14705 (LA353_14700)3048425..3049075+651WP_048982489.1carbon-nitrogen hydrolase family protein-
LA353_RS14710 (LA353_14705)3049100..3049762+663WP_047051600.1exodeoxyribonuclease X-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T216867 NZ_CP083613:c3046207-3046104 [Enterobacter hormaechei subsp. oharae]
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 202 bp

>AT216867 NZ_CP083613:3046099-3046300 [Enterobacter hormaechei subsp. oharae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References