Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3437585..3437856 | Replicon | chromosome |
| Accession | NZ_CP083610 | ||
| Organism | Escherichia coli strain EC2648-Vir1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3437715..3437818 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3437585..3437856 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LAJ48_RS16495 | 3434140..3434802 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LAJ48_RS16500 | 3434826..3435482 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LAJ48_RS16505 | 3435584..3435814 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LAJ48_RS16510 | 3435953..3436327 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LAJ48_RS16515 | 3436331..3437203 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| LAJ48_RS16520 | 3437216..3437557 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3437585..3437856 | - | 272 | - | - | Antitoxin |
| - | 3437715..3437818 | + | 104 | - | - | Toxin |
| LAJ48_RS16525 | 3437953..3438609 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LAJ48_RS16530 | 3438610..3438801 | - | 192 | WP_000457842.1 | YebW family protein | - |
| LAJ48_RS16535 | 3438906..3439142 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LAJ48_RS16540 | 3439260..3440699 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216841 NZ_CP083610:3437715-3437818 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT216841 NZ_CP083610:c3437856-3437585 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
