Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995364..1995635 | Replicon | chromosome |
| Accession | NZ_CP083585 | ||
| Organism | Escherichia coli strain ECNB21-M121 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995494..1995597 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995364..1995635 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA372_RS09560 | 1991919..1992581 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LA372_RS09565 | 1992605..1993261 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LA372_RS09570 | 1993363..1993593 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LA372_RS09575 | 1993732..1994106 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LA372_RS09580 | 1994110..1994982 | + | 873 | WP_047623971.1 | copper homeostasis membrane protein CopD | - |
| LA372_RS09585 | 1994995..1995336 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1995364..1995635 | - | 272 | - | - | Antitoxin |
| - | 1995494..1995597 | + | 104 | - | - | Toxin |
| LA372_RS09590 | 1995732..1996388 | + | 657 | WP_047623972.1 | protein-serine/threonine phosphatase | - |
| LA372_RS09595 | 1996389..1996580 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LA372_RS09600 | 1996685..1996921 | - | 237 | WP_047623973.1 | YebV family protein | - |
| LA372_RS09605 | 1997039..1998478 | - | 1440 | WP_047624031.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1971653..2011478 | 39825 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216776 NZ_CP083585:1995494-1995597 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT216776 NZ_CP083585:c1995635-1995364 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
