Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | mazEF/PRK09907-MazE |
| Location | 998285..998868 | Replicon | chromosome |
| Accession | NZ_CP083585 | ||
| Organism | Escherichia coli strain ECNB21-M121 | ||
Toxin (Protein)
| Gene name | mazF | Uniprot ID | S1EZP4 |
| Locus tag | LA372_RS04925 | Protein ID | WP_000254738.1 |
| Coordinates | 998533..998868 (+) | Length | 112 a.a. |
Antitoxin (Protein)
| Gene name | mazE | Uniprot ID | S1P3W5 |
| Locus tag | LA372_RS04920 | Protein ID | WP_000581937.1 |
| Coordinates | 998285..998533 (+) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA372_RS04910 (994624) | 994624..995925 | + | 1302 | WP_000046821.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| LA372_RS04915 (995973) | 995973..998207 | + | 2235 | WP_000226815.1 | GTP pyrophosphokinase | - |
| LA372_RS04920 (998285) | 998285..998533 | + | 249 | WP_000581937.1 | type II toxin-antitoxin system antitoxin MazE | Antitoxin |
| LA372_RS04925 (998533) | 998533..998868 | + | 336 | WP_000254738.1 | endoribonuclease MazF | Toxin |
| LA372_RS04930 (998939) | 998939..999730 | + | 792 | WP_001071643.1 | nucleoside triphosphate pyrophosphohydrolase | - |
| LA372_RS04935 (999958) | 999958..1001595 | + | 1638 | WP_000210878.1 | CTP synthase (glutamine hydrolyzing) | - |
| LA372_RS04940 (1001683) | 1001683..1002981 | + | 1299 | WP_000036723.1 | phosphopyruvate hydratase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 112 a.a. Molecular weight: 12098.04 Da Isoelectric Point: 8.2618
>T216775 WP_000254738.1 NZ_CP083585:998533-998868 [Escherichia coli]
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKS
IAWRARGATKKGTVAPEELQLIKAKINVLIG
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKS
IAWRARGATKKGTVAPEELQLIKAKINVLIG
Download Length: 336 bp
>T216775 NZ_CP113432:1846543-1847112 [Pseudomonas sp. ZM23]
ATGTTCAGACCGTTACCCATCACCTTGCAGCGCGGGGCCTTGCGCCTGGAGCCAATGGTGGAGGCCGACGTGCCGGAACT
GGTGACGCTGGCGGAAGCGAACCGCGAGGTGCTGCAGTTCATGAGCGCGCCACAGCGCCCGGACTGGTATCGCCAGGGCC
TTGCGGAGCAGCGTGATGGCCGCGCGCTACCGTTGGTCGTACGGCTGGGCAACCGGATCGTCGGTACCACGCGCTTCATG
GACTTCCTCCCGGCGCTGCCGGCCTGCGAGATCGGCGCCACCTGGCTGGACCAGGAGCAGCATGGCCGCGGCCTGAATGC
CACCATGAAGTACCTGATGCTGCGTCATGCCTTCGATAGCTGGAAGATGGTCCGCGTACAGTTCAAGACCGCCGCCAGCA
ATCAGCGCGGCCAGCGCTCTATCGAGAAGCTCGGCGCAGTGCGCGAAGGCGTGCTGCGCAATCATCGCCGGCTGGCTGGC
GGGCGCCTCGACGACACCATCCTCTACAGCATCACCGATCATGAGTGGCCACAGGTGAAGGCCGCGCTCGAGGCTGGTTT
CTCCGGCTGA
ATGTTCAGACCGTTACCCATCACCTTGCAGCGCGGGGCCTTGCGCCTGGAGCCAATGGTGGAGGCCGACGTGCCGGAACT
GGTGACGCTGGCGGAAGCGAACCGCGAGGTGCTGCAGTTCATGAGCGCGCCACAGCGCCCGGACTGGTATCGCCAGGGCC
TTGCGGAGCAGCGTGATGGCCGCGCGCTACCGTTGGTCGTACGGCTGGGCAACCGGATCGTCGGTACCACGCGCTTCATG
GACTTCCTCCCGGCGCTGCCGGCCTGCGAGATCGGCGCCACCTGGCTGGACCAGGAGCAGCATGGCCGCGGCCTGAATGC
CACCATGAAGTACCTGATGCTGCGTCATGCCTTCGATAGCTGGAAGATGGTCCGCGTACAGTTCAAGACCGCCGCCAGCA
ATCAGCGCGGCCAGCGCTCTATCGAGAAGCTCGGCGCAGTGCGCGAAGGCGTGCTGCGCAATCATCGCCGGCTGGCTGGC
GGGCGCCTCGACGACACCATCCTCTACAGCATCACCGATCATGAGTGGCCACAGGTGAAGGCCGCGCTCGAGGCTGGTTT
CTCCGGCTGA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9355.74 Da Isoelectric Point: 4.4665
>AT216775 WP_000581937.1 NZ_CP083585:998285-998533 [Escherichia coli]
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKE
VW
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKE
VW
Download Length: 249 bp
>AT216775 NZ_CP113432:1847169-1848020 [Pseudomonas sp. ZM23]
ATGGCACAAGGCAACGCGAGCGGTGAGAAGACACGGTTCTGGCGGGCCCAGGAGCTGGGTGGCGTCGAGCTGCTGCATGC
ACGCTACATCGAGCAGGTGTTCTCGCCCCACGTCCATGAAGGCTTCGCCTTCGTCATGATCGAGCAGGGTGCGCAGCGCT
TCCACCATCGCGGCGCCGAGCACTTCGCGCCGTCGGGTAGCGTGGTGCTGATCAACCCCGACGAGGTTCACACCGGCTCC
AAGGCCGACGACGCCGGCTGGCGTTACCGAGGTTTCTACCCGGAGCTGGCGCAGGTCTCCGGCGTGCTGGAGGAGCTGGA
GCTGGGCAGAGGCGGCACGCCGTCGTTCGACGCCAGTGTGGTGTTCAATCCGGAGCTGGTGCAGGCGCTGTTCGCGGCTC
ACCGCCTGGTGGACTCCGACGCCAGCGTGCTACAGCGCCAGACTTGCTGGCGCGAGGCGCTCCTGCTGCTGTTCCAGCGT
CACGCGCGGATTCCCGAAGCGCCACCGGCTGGCAACGAACCGGTGGCCGTGGCGCGCGCCCGCGAACTGCTAGGCTCGCG
GCTGATGGAGCCGCCATCGCTGGAGGAACTGGCCGCTGCCGTCGGCCTGTCGCCGTTCCACTTCGCCCGCGTGTTCCGCA
AGGCCACCGGCCTGCCGCCCCACGCCTGGCTCAAGCAGCGCCGACTGGAACAGGCGAGGGCGCTGCTCAAGCAGGGCTGC
ATGCCGGTAAACGTGGCGACGCAGTTGGGCTTCGCCGACCAGAGCCACCTCAGCCGGCAGTTCAAGCAGGCTTATGGCGT
CGGTCCTGGCGAGTACCGCCAGGCGTGCGCTCGGTCGTTCCGCTCGGTCTGA
ATGGCACAAGGCAACGCGAGCGGTGAGAAGACACGGTTCTGGCGGGCCCAGGAGCTGGGTGGCGTCGAGCTGCTGCATGC
ACGCTACATCGAGCAGGTGTTCTCGCCCCACGTCCATGAAGGCTTCGCCTTCGTCATGATCGAGCAGGGTGCGCAGCGCT
TCCACCATCGCGGCGCCGAGCACTTCGCGCCGTCGGGTAGCGTGGTGCTGATCAACCCCGACGAGGTTCACACCGGCTCC
AAGGCCGACGACGCCGGCTGGCGTTACCGAGGTTTCTACCCGGAGCTGGCGCAGGTCTCCGGCGTGCTGGAGGAGCTGGA
GCTGGGCAGAGGCGGCACGCCGTCGTTCGACGCCAGTGTGGTGTTCAATCCGGAGCTGGTGCAGGCGCTGTTCGCGGCTC
ACCGCCTGGTGGACTCCGACGCCAGCGTGCTACAGCGCCAGACTTGCTGGCGCGAGGCGCTCCTGCTGCTGTTCCAGCGT
CACGCGCGGATTCCCGAAGCGCCACCGGCTGGCAACGAACCGGTGGCCGTGGCGCGCGCCCGCGAACTGCTAGGCTCGCG
GCTGATGGAGCCGCCATCGCTGGAGGAACTGGCCGCTGCCGTCGGCCTGTCGCCGTTCCACTTCGCCCGCGTGTTCCGCA
AGGCCACCGGCCTGCCGCCCCACGCCTGGCTCAAGCAGCGCCGACTGGAACAGGCGAGGGCGCTGCTCAAGCAGGGCTGC
ATGCCGGTAAACGTGGCGACGCAGTTGGGCTTCGCCGACCAGAGCCACCTCAGCCGGCAGTTCAAGCAGGCTTATGGCGT
CGGTCCTGGCGAGTACCGCCAGGCGTGCGCTCGGTCGTTCCGCTCGGTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|