Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1150726..1150997 Replicon chromosome
Accession NZ_CP083503
Organism Escherichia coli strain elppa5

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1150764..1150867 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1150726..1150997 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K9U08_RS05810 1147883..1149322 + 1440 WP_024166480.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
K9U08_RS05815 1149440..1149676 + 237 WP_001295499.1 YebV family protein -
K9U08_RS05820 1149781..1149972 + 192 WP_001296140.1 YebW family protein -
K9U08_RS05825 1149973..1150629 - 657 WP_001520704.1 protein-serine/threonine phosphatase -
- 1150726..1150997 + 272 - - Antitoxin
- 1150764..1150867 - 104 - - Toxin
K9U08_RS05830 1151023..1151364 - 342 WP_001520705.1 YebY family protein -
K9U08_RS05835 1151377..1152249 - 873 WP_000879330.1 copper homeostasis membrane protein CopD -
K9U08_RS05840 1152253..1152627 - 375 WP_000204705.1 CopC domain-containing protein YobA -
K9U08_RS05845 1152766..1152996 + 231 WP_000916763.1 DNA polymerase III subunit theta -
K9U08_RS05850 1153098..1153754 + 657 WP_000011653.1 carbon-nitrogen hydrolase family protein YobB -
K9U08_RS05855 1153778..1154440 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T216645 NZ_CP083503:c1150867-1150764 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT216645 NZ_CP083503:1150726-1150997 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References