Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 284534..284805 | Replicon | chromosome |
| Accession | NZ_CP083481 | ||
| Organism | Escherichia coli strain elppa9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 284664..284767 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 284534..284805 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9U12_RS01365 | 281089..281751 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K9U12_RS01370 | 281775..282431 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K9U12_RS01375 | 282533..282763 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K9U12_RS01380 | 282902..283276 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| K9U12_RS01385 | 283280..284152 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| K9U12_RS01390 | 284165..284506 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 284534..284805 | - | 272 | - | - | Antitoxin |
| - | 284664..284767 | + | 104 | - | - | Toxin |
| K9U12_RS01395 | 284902..285558 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| K9U12_RS01400 | 285559..285750 | - | 192 | WP_001296140.1 | YebW family protein | - |
| K9U12_RS01405 | 285855..286091 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K9U12_RS01410 | 286209..287648 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216518 NZ_CP083481:284664-284767 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT216518 NZ_CP083481:c284805-284534 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
