Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3116677..3116948 | Replicon | chromosome |
| Accession | NZ_CP083478 | ||
| Organism | Escherichia coli strain elppa10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3116807..3116910 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3116677..3116948 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9U13_RS14940 | 3113232..3113894 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K9U13_RS14945 | 3113918..3114574 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K9U13_RS14950 | 3114676..3114906 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K9U13_RS14955 | 3115045..3115419 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| K9U13_RS14960 | 3115423..3116295 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| K9U13_RS14965 | 3116308..3116649 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3116677..3116948 | - | 272 | - | - | Antitoxin |
| - | 3116807..3116910 | + | 104 | - | - | Toxin |
| K9U13_RS14970 | 3117045..3117701 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K9U13_RS14975 | 3117702..3117893 | - | 192 | WP_001296140.1 | YebW family protein | - |
| K9U13_RS14980 | 3117998..3118234 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K9U13_RS14985 | 3118352..3119791 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216495 NZ_CP083478:3116807-3116910 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT216495 NZ_CP083478:c3116948-3116677 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
