Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4456913..4457058 | Replicon | chromosome |
| Accession | NZ_CP083445 | ||
| Organism | Klebsiella pneumoniae strain KP294 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4456949..4457051 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4456913..4457058 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LAV94_RS21690 | 4452043..4454103 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LAV94_RS21695 | 4454107..4454766 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LAV94_RS21700 | 4454845..4455075 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LAV94_RS21705 | 4455188..4455562 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LAV94_RS21710 | 4455566..4456435 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LAV94_RS21715 | 4456452..4456790 | + | 339 | WP_004189269.1 | YebY family protein | - |
| - | 4456913..4457058 | - | 146 | - | - | Antitoxin |
| - | 4456949..4457051 | + | 103 | - | - | Toxin |
| LAV94_RS21720 | 4457425..4457568 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LAV94_RS21725 | 4457673..4458641 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LAV94_RS21730 | 4458798..4459451 | + | 654 | WP_004189273.1 | protein-serine/threonine phosphatase | - |
| LAV94_RS21735 | 4459448..4459639 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LAV94_RS21740 | 4459737..4459976 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LAV94_RS21745 | 4460092..4461525 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T216457 NZ_CP083445:4456949-4457051 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT216457 NZ_CP083445:c4457058-4456913 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
