Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2151663..2151808 | Replicon | chromosome |
| Accession | NZ_CP083443 | ||
| Organism | Klebsiella pneumoniae strain KP1711R | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2151699..2151801 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2151663..2151808 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9870_RS10430 | 2146793..2148853 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K9870_RS10435 | 2148857..2149516 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| K9870_RS10440 | 2149595..2149825 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K9870_RS10445 | 2149938..2150312 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K9870_RS10450 | 2150316..2151185 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| K9870_RS10455 | 2151202..2151540 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2151663..2151808 | - | 146 | - | - | Antitoxin |
| - | 2151699..2151801 | + | 103 | - | - | Toxin |
| K9870_RS10460 | 2152177..2152320 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K9870_RS10465 | 2152425..2153393 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K9870_RS10470 | 2153550..2154203 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| K9870_RS10475 | 2154200..2154391 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K9870_RS10480 | 2154489..2154728 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K9870_RS10485 | 2154844..2156277 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T216429 NZ_CP083443:2151699-2151801 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT216429 NZ_CP083443:c2151808-2151663 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
