Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1923063..1923334 | Replicon | chromosome |
| Accession | NZ_CP083410 | ||
| Organism | Escherichia coli strain RP437 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1923101..1923204 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1923063..1923334 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LAJ62_RS09495 | 1920220..1921659 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LAJ62_RS09500 | 1921777..1922013 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LAJ62_RS09505 | 1922118..1922309 | + | 192 | WP_000457842.1 | YebW family protein | - |
| LAJ62_RS09510 | 1922310..1922966 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1923063..1923334 | + | 272 | - | - | Antitoxin |
| - | 1923101..1923204 | - | 104 | - | - | Toxin |
| LAJ62_RS09515 | 1923362..1923703 | - | 342 | WP_000976476.1 | YebY family protein | - |
| LAJ62_RS09520 | 1923716..1924588 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| LAJ62_RS09525 | 1924592..1924966 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LAJ62_RS09530 | 1925105..1925335 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LAJ62_RS09535 | 1925437..1926093 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LAJ62_RS09540 | 1926117..1926779 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216372 NZ_CP083410:c1923204-1923101 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT216372 NZ_CP083410:1923063-1923334 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
