Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2854424..2854566 | Replicon | chromosome |
| Accession | NZ_CP083403 | ||
| Organism | Enterobacter bugandensis strain XL95 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2854428..2854531 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2854424..2854566 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9O83_RS13590 (K9O83_13555) | 2849600..2851048 | + | 1449 | WP_224065782.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K9O83_RS13595 (K9O83_13560) | 2851154..2851393 | + | 240 | WP_008500472.1 | YebV family protein | - |
| K9O83_RS13600 (K9O83_13565) | 2851428..2852072 | - | 645 | WP_041909471.1 | protein-serine/threonine phosphatase | - |
| K9O83_RS13605 (K9O83_13570) | 2852241..2853182 | + | 942 | WP_048958966.1 | VirK/YbjX family protein | - |
| K9O83_RS13610 (K9O83_13575) | 2853355..2854230 | + | 876 | WP_028013549.1 | benzoate transporter | - |
| - | 2854424..2854566 | + | 143 | - | - | Antitoxin |
| - | 2854428..2854531 | - | 104 | - | - | Toxin |
| K9O83_RS13615 (K9O83_13580) | 2854671..2855009 | - | 339 | WP_028013604.1 | YebY family protein | - |
| K9O83_RS13620 (K9O83_13585) | 2855026..2855895 | - | 870 | WP_224065783.1 | copper homeostasis membrane protein CopD | - |
| K9O83_RS13625 (K9O83_13590) | 2855897..2856268 | - | 372 | WP_224066650.1 | CopC domain-containing protein YobA | - |
| K9O83_RS13630 (K9O83_13595) | 2856405..2856635 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| K9O83_RS13635 (K9O83_13600) | 2856746..2857396 | + | 651 | WP_224065784.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| K9O83_RS13640 (K9O83_13605) | 2857421..2858083 | + | 663 | WP_025756911.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216343 NZ_CP083403:c2854531-2854428 [Enterobacter bugandensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT216343 NZ_CP083403:2854424-2854566 [Enterobacter bugandensis]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
