Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 2109153..2109712 | Replicon | chromosome |
| Accession | NZ_CP083361 | ||
| Organism | Vibrio parahaemolyticus strain 20-082E4 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | K9N54_RS10055 | Protein ID | WP_025793434.1 |
| Coordinates | 2109434..2109712 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | K9N54_RS10050 | Protein ID | WP_025793433.1 |
| Coordinates | 2109153..2109437 (+) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9N54_RS10005 (K9N54_09950) | 2105102..2105635 | - | 534 | WP_025793428.1 | cysteine hydrolase family protein | - |
| K9N54_RS10010 (K9N54_09955) | 2105665..2105787 | - | 123 | WP_224067030.1 | DUF3265 domain-containing protein | - |
| K9N54_RS10015 (K9N54_09960) | 2105784..2106260 | - | 477 | WP_025793429.1 | GNAT family N-acetyltransferase | - |
| K9N54_RS10020 (K9N54_09965) | 2106288..2106377 | - | 90 | WP_077281740.1 | DUF3265 domain-containing protein | - |
| K9N54_RS10025 | 2106405..2106614 | - | 210 | WP_224067108.1 | TonB family protein | - |
| K9N54_RS10030 (K9N54_09975) | 2106920..2107315 | - | 396 | WP_025793430.1 | hypothetical protein | - |
| K9N54_RS10035 (K9N54_09980) | 2107468..2107869 | - | 402 | WP_025793431.1 | DUF2007 domain-containing protein | - |
| K9N54_RS10040 | 2107898..2108041 | - | 144 | WP_071936853.1 | DUF3265 domain-containing protein | - |
| K9N54_RS10045 (K9N54_09990) | 2108349..2108873 | - | 525 | WP_025793432.1 | hypothetical protein | - |
| K9N54_RS10050 (K9N54_09995) | 2109153..2109437 | + | 285 | WP_025793433.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| K9N54_RS10055 (K9N54_10000) | 2109434..2109712 | + | 279 | WP_025793434.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| K9N54_RS10060 (K9N54_10005) | 2109741..2109833 | - | 93 | WP_079390553.1 | DUF3265 domain-containing protein | - |
| K9N54_RS10065 (K9N54_10010) | 2109856..2110734 | - | 879 | WP_025793435.1 | hypothetical protein | - |
| K9N54_RS10070 | 2110769..2110898 | - | 130 | Protein_1956 | DUF3265 domain-containing protein | - |
| K9N54_RS10075 (K9N54_10015) | 2111425..2111925 | - | 501 | WP_025506945.1 | hypothetical protein | - |
| K9N54_RS10080 (K9N54_10020) | 2112062..2112547 | - | 486 | WP_148299771.1 | hypothetical protein | - |
| K9N54_RS10085 (K9N54_10025) | 2112663..2113040 | - | 378 | WP_086583718.1 | hypothetical protein | - |
| K9N54_RS10090 (K9N54_10030) | 2113257..2113556 | - | 300 | WP_025793310.1 | antibiotic biosynthesis monooxygenase | - |
| K9N54_RS10095 | 2113727..2113964 | - | 238 | Protein_1961 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2041179..2166543 | 125364 | |
| - | inside | Integron | - | - | 2090758..2165418 | 74660 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10893.59 Da Isoelectric Point: 4.4442
>T216309 WP_025793434.1 NZ_CP083361:2109434-2109712 [Vibrio parahaemolyticus]
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIDVKVENLLEQPLMGVQRDGIRGRLLIIPEISMIISHWVEGDIIRVM
RVLHQKQKFPTD
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIDVKVENLLEQPLMGVQRDGIRGRLLIIPEISMIISHWVEGDIIRVM
RVLHQKQKFPTD
Download Length: 279 bp
>T216309 NZ_CP113009:c559481-559293 [Staphylococcus aureus]
ATGTCTTTACATTTTGCAATTCTGTTTTGGCTAGCATTAATTTTCTTAGTTGCCGCTACGTTTATACTCGTATTAATGAA
AAAAACTAGCAAAGAATCTAAAAAAGAGTCCTATTTAAGTTTCACTGTCATTCTCTATATTTTTGGATTCGCTATATTAA
TATACACATTTATATTTGGTGTGCTATAA
ATGTCTTTACATTTTGCAATTCTGTTTTGGCTAGCATTAATTTTCTTAGTTGCCGCTACGTTTATACTCGTATTAATGAA
AAAAACTAGCAAAGAATCTAAAAAAGAGTCCTATTTAAGTTTCACTGTCATTCTCTATATTTTTGGATTCGCTATATTAA
TATACACATTTATATTTGGTGTGCTATAA
Antitoxin
Download Length: 95 a.a. Molecular weight: 11039.37 Da Isoelectric Point: 9.2167
>AT216309 WP_025793433.1 NZ_CP083361:2109153-2109437 [Vibrio parahaemolyticus]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKALSHDAWLTEQVNLAFEKFDSGKSVFVEHQTAKSR
MEERKARIRNRGKQ
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKALSHDAWLTEQVNLAFEKFDSGKSVFVEHQTAKSR
MEERKARIRNRGKQ
Download Length: 285 bp
>AT216309 NZ_CP113009:c559770-559510 [Staphylococcus aureus]
ATGAATAACATTTTGTTAAATGCTATCAATATAGTTATTACTACCACTTTTGTTATCTTTAATATTTTAATCACATATAA
TAAAGATTTAGATGATTTATGTTGGCTCCTGCCTGGTATTATCATTTGTGGTGTGATACTCATCGTATCCTTTACCATTG
CAATGATAACTAAAAACTGGTTAAGTGAAATATTATTTTTTATAAATATCGTACTCGTTCTCTATTACATTTATCCTATT
TTTTATAGTTTTATAGGTTAA
ATGAATAACATTTTGTTAAATGCTATCAATATAGTTATTACTACCACTTTTGTTATCTTTAATATTTTAATCACATATAA
TAAAGATTTAGATGATTTATGTTGGCTCCTGCCTGGTATTATCATTTGTGGTGTGATACTCATCGTATCCTTTACCATTG
CAATGATAACTAAAAACTGGTTAAGTGAAATATTATTTTTTATAAATATCGTACTCGTTCTCTATTACATTTATCCTATT
TTTTATAGTTTTATAGGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|