Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1870287..1870558 | Replicon | chromosome |
| Accession | NZ_CP083274 | ||
| Organism | Escherichia coli strain Rosetta2-DE3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1870417..1870520 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1870287..1870558 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6U01_RS08850 | 1866843..1867505 | - | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
| K6U01_RS08855 | 1867529..1868185 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K6U01_RS08860 | 1868287..1868517 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K6U01_RS08865 | 1868656..1869030 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K6U01_RS08870 | 1869034..1869906 | + | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| K6U01_RS08875 | 1869919..1870260 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1870287..1870558 | - | 272 | - | - | Antitoxin |
| - | 1870417..1870520 | + | 104 | - | - | Toxin |
| K6U01_RS08880 | 1870655..1871311 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K6U01_RS08885 | 1871312..1871503 | - | 192 | WP_001296140.1 | YebW family protein | - |
| K6U01_RS08890 | 1871608..1871844 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K6U01_RS08895 | 1871962..1873401 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216264 NZ_CP083274:1870417-1870520 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT216264 NZ_CP083274:c1870558-1870287 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
