Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1643718..1643989 | Replicon | chromosome |
| Accession | NZ_CP083273 | ||
| Organism | Escherichia coli strain BL21-RIPL | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1643848..1643951 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1643718..1643989 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9U36_RS07850 | 1640274..1640936 | - | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
| K9U36_RS07855 | 1640960..1641616 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K9U36_RS07860 | 1641718..1641948 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K9U36_RS07865 | 1642087..1642461 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K9U36_RS07870 | 1642465..1643337 | + | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| K9U36_RS07875 | 1643350..1643691 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1643718..1643989 | - | 272 | - | - | Antitoxin |
| - | 1643848..1643951 | + | 104 | - | - | Toxin |
| K9U36_RS07880 | 1644086..1644742 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K9U36_RS07885 | 1644743..1644934 | - | 192 | WP_001296140.1 | YebW family protein | - |
| K9U36_RS07890 | 1645039..1645275 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K9U36_RS07895 | 1645393..1646832 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216239 NZ_CP083273:1643848-1643951 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT216239 NZ_CP083273:c1643989-1643718 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
