Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1834916..1835184 | Replicon | chromosome |
| Accession | NC_008253 | ||
| Organism | Escherichia coli 536 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1834954..1835056 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1834916..1835184 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECP_RS09115 | 1832073..1833512 | + | 1440 | WP_024174322.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECP_RS09120 | 1833630..1833866 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECP_RS09125 | 1833971..1834162 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECP_RS09130 | 1834163..1834819 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 1834916..1835184 | + | 269 | - | - | Antitoxin |
| - | 1834954..1835056 | - | 103 | - | - | Toxin |
| ECP_RS09140 | 1835214..1835555 | - | 342 | WP_000984819.1 | YebY family protein | - |
| ECP_RS09145 | 1835568..1836440 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| ECP_RS09150 | 1836444..1836818 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECP_RS09155 | 1836957..1837187 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECP_RS09160 | 1837290..1837946 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| ECP_RS09165 | 1837970..1838632 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T21619 NC_008253:c1835056-1834954 [Escherichia coli 536]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT21619 NC_008253:1834916-1835184 [Escherichia coli 536]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
