Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2066478..2066623 | Replicon | chromosome |
| Accession | NZ_CP083075 | ||
| Organism | Klebsiella pneumoniae strain 0113481141 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2066514..2066616 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2066478..2066623 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9F42_RS10110 | 2061608..2063668 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K9F42_RS10115 | 2063672..2064331 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K9F42_RS10120 | 2064410..2064640 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K9F42_RS10125 | 2064753..2065127 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| K9F42_RS10130 | 2065131..2066000 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| K9F42_RS10135 | 2066017..2066355 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2066478..2066623 | - | 146 | - | - | Antitoxin |
| - | 2066514..2066616 | + | 103 | - | - | Toxin |
| K9F42_RS10140 | 2066992..2067135 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| K9F42_RS10145 | 2067240..2068208 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| K9F42_RS10150 | 2068365..2069018 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| K9F42_RS10155 | 2069015..2069206 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K9F42_RS10160 | 2069304..2069543 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K9F42_RS10165 | 2069659..2071092 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T216131 NZ_CP083075:2066514-2066616 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT216131 NZ_CP083075:c2066623-2066478 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
