Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1828563..1828708 | Replicon | chromosome |
| Accession | NZ_CP083051 | ||
| Organism | Klebsiella pneumoniae strain 0213293972 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1828599..1828701 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1828563..1828708 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9F37_RS08820 | 1823693..1825753 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K9F37_RS08825 | 1825757..1826416 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K9F37_RS08830 | 1826495..1826725 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K9F37_RS08835 | 1826838..1827212 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K9F37_RS08840 | 1827216..1828085 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| K9F37_RS08845 | 1828102..1828440 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1828563..1828708 | - | 146 | - | - | Antitoxin |
| - | 1828599..1828701 | + | 103 | - | - | Toxin |
| K9F37_RS08850 | 1829076..1829219 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K9F37_RS08855 | 1829324..1830292 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K9F37_RS08860 | 1830449..1831102 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| K9F37_RS08865 | 1831099..1831290 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K9F37_RS08870 | 1831388..1831627 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K9F37_RS08875 | 1831743..1833176 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T216031 NZ_CP083051:1828599-1828701 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT216031 NZ_CP083051:c1828708-1828563 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
