Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1313856..1313950 Replicon chromosome
Accession NC_008150
Organism Yersinia pestis Antiqua

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1313856..1313949 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1313856..1313950 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
YPA_RS06120 1309439..1310368 + 930 WP_002220513.1 prolyl aminopeptidase -
YPA_RS06125 1310428..1310658 - 231 WP_002211091.1 DNA polymerase III subunit theta -
YPA_RS06130 1311059..1311568 + 510 WP_002211092.1 non-heme ferritin -
YPA_RS06135 1311975..1312361 + 387 WP_002211093.1 CopC domain-containing protein YobA -
YPA_RS06140 1312364..1313248 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
YPA_RS06145 1313345..1313686 + 342 WP_002211095.1 YebY family protein -
- 1313856..1313949 + 94 - - Toxin
- 1313856..1313950 - 95 - - Antitoxin
YPA_RS06155 1314209..1314535 - 327 WP_002211097.1 DUF1493 family protein -
YPA_RS06160 1314529..1314987 - 459 WP_002211098.1 hypothetical protein -
YPA_RS06165 1315519..1316679 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
YPA_RS06170 1316679..1318758 + 2080 Protein_1143 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T21601 NC_008150:1313856-1313949 [Yersinia pestis Antiqua]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT21601 NC_008150:c1313950-1313856 [Yersinia pestis Antiqua]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References