Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2055160..2055305 | Replicon | chromosome |
| Accession | NZ_CP083047 | ||
| Organism | Klebsiella pneumoniae strain 400195-1-18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2055196..2055298 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2055160..2055305 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9F24_RS10070 | 2050290..2052350 | + | 2061 | WP_152133137.1 | oligopeptidase B | - |
| K9F24_RS10075 | 2052354..2053013 | - | 660 | WP_043906809.1 | exodeoxyribonuclease X | - |
| K9F24_RS10080 | 2053092..2053322 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K9F24_RS10085 | 2053435..2053809 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K9F24_RS10090 | 2053813..2054682 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| K9F24_RS10095 | 2054699..2055037 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2055160..2055305 | - | 146 | - | - | Antitoxin |
| - | 2055196..2055298 | + | 103 | - | - | Toxin |
| K9F24_RS10100 | 2055674..2055817 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K9F24_RS10105 | 2055922..2056890 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K9F24_RS10110 | 2057047..2057700 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| K9F24_RS10115 | 2057697..2057888 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K9F24_RS10120 | 2057986..2058225 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K9F24_RS10125 | 2058341..2059774 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1982105..2062531 | 80426 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T216008 NZ_CP083047:2055196-2055298 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT216008 NZ_CP083047:c2055305-2055160 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
