Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2079430..2079575 | Replicon | chromosome |
| Accession | NZ_CP083011 | ||
| Organism | Klebsiella pneumoniae strain 6710.71 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2079466..2079568 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2079430..2079575 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9F28_RS10290 | 2074560..2076620 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K9F28_RS10295 | 2076624..2077283 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K9F28_RS10300 | 2077362..2077592 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K9F28_RS10305 | 2077705..2078079 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K9F28_RS10310 | 2078083..2078952 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| K9F28_RS10315 | 2078969..2079307 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2079430..2079575 | - | 146 | - | - | Antitoxin |
| - | 2079466..2079568 | + | 103 | - | - | Toxin |
| K9F28_RS10320 | 2079943..2080086 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K9F28_RS10325 | 2080191..2081159 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K9F28_RS10330 | 2081316..2081969 | + | 654 | WP_032418800.1 | protein-serine/threonine phosphatase | - |
| K9F28_RS10335 | 2081966..2082157 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K9F28_RS10340 | 2082255..2082494 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K9F28_RS10345 | 2082610..2084043 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215877 NZ_CP083011:2079466-2079568 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT215877 NZ_CP083011:c2079575-2079430 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
